Variant report

Variant	rs561556
Chromosome Location	chr18:29368427-29368428
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1030405	0.93[AFR][1000 genomes]
rs16962347	0.86[AFR][1000 genomes]
rs16962349	0.86[AFR][1000 genomes]
rs16962376	0.86[AFR][1000 genomes]
rs16962404	0.86[AFR][1000 genomes]
rs16962529	0.93[AFR][1000 genomes]
rs1876783	0.93[AFR][1000 genomes]
rs4570943	0.93[AFR][1000 genomes]
rs476509	0.86[AFR][1000 genomes]
rs492777	0.93[AFR][1000 genomes]
rs520531	0.93[AFR][1000 genomes]
rs522046	0.93[AFR][1000 genomes]
rs551921	0.93[AFR][1000 genomes]
rs574924	0.93[AFR][1000 genomes]
rs589558	0.93[AFR][1000 genomes]
rs595195	1.00[AFR][1000 genomes]
rs610869	0.93[AFR][1000 genomes]
rs6506949	0.93[AFR][1000 genomes]
rs6506953	1.00[ASW][hapmap]
rs651501	0.93[AFR][1000 genomes]
rs665765	0.93[AFR][1000 genomes]
rs670689	0.93[AFR][1000 genomes]
rs673202	0.93[AFR][1000 genomes]
rs7229729	0.93[AFR][1000 genomes]
rs8089228	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29363200-29375600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:29367800-29372200	Weak transcription	Fetal Intestine Large	intestine
3	chr18:29368400-29369600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:29368400-29372200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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