Variant report

Variant	rs574924
Chromosome Location	chr18:29372674-29372675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1030405	0.86[AFR][1000 genomes]
rs16962529	0.86[AFR][1000 genomes]
rs1876783	0.86[AFR][1000 genomes]
rs4570943	0.86[AFR][1000 genomes]
rs492777	0.86[AFR][1000 genomes]
rs520531	0.86[AFR][1000 genomes]
rs522046	0.86[AFR][1000 genomes]
rs551921	0.86[AFR][1000 genomes]
rs561556	0.93[AFR][1000 genomes]
rs589558	0.86[AFR][1000 genomes]
rs595195	0.93[AFR][1000 genomes]
rs610869	0.86[AFR][1000 genomes]
rs6506949	0.86[AFR][1000 genomes]
rs651501	0.86[AFR][1000 genomes]
rs665765	0.86[AFR][1000 genomes]
rs670689	0.86[AFR][1000 genomes]
rs673202	0.86[AFR][1000 genomes]
rs7229729	0.86[AFR][1000 genomes]
rs8089228	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059078	chr18:29225522-29454980	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543675	chr18:29225522-29454980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv431975	chr18:29311034-29527902	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1057229	chr18:29335175-29514265	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	esv13087	chr18:29370464-29391297	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv2247	chr18:29370842-29415712	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29363200-29375600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:29369600-29373600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:29369600-29375000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:29369600-29377200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:29370400-29372800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr18:29371000-29373000	Enhancers	HepG2	liver
7	chr18:29371000-29373800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr18:29371200-29373600	Enhancers	Liver	Liver
9	chr18:29372200-29373400	Enhancers	Fetal Intestine Small	intestine
10	chr18:29372200-29373600	Enhancers	Fetal Intestine Large	intestine
11	chr18:29372600-29374200	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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