Variant report

Variant	rs56156039
Chromosome Location	chr3:143306128-143306129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143300021..143302674-chr3:143306084..143308707,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16853883	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16853885	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58311212	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60777877	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61084018	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6763357	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6763515	0.84[ASN][1000 genomes]
rs6768652	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6771178	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6771387	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6776465	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6796090	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6801430	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6806933	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6808665	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6808788	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73867678	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73867679	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73867680	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73867683	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143277400-143310200	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr3:143284000-143306400	Weak transcription	Spleen	Spleen
3	chr3:143294400-143317800	Weak transcription	Brain Substantia Nigra	brain
4	chr3:143294800-143309400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:143296200-143313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:143297600-143320000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:143297600-143339000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr3:143298600-143312600	Weak transcription	Gastric	stomach
9	chr3:143300400-143336800	Weak transcription	Primary T cells from cord blood	blood
10	chr3:143302000-143306200	Weak transcription	Esophagus	oesophagus
11	chr3:143302000-143311200	Weak transcription	Placenta	Placenta
12	chr3:143303600-143306600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:143304000-143306200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:143304200-143306400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr3:143304400-143306800	Enhancers	Primary B cells from peripheral blood	blood
16	chr3:143304400-143306800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr3:143304600-143306200	Enhancers	Small Intestine	intestine
18	chr3:143304600-143307200	Enhancers	Fetal Thymus	thymus
19	chr3:143304800-143306400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr3:143305000-143306200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:143305000-143306200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:143305000-143306200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:143305000-143306400	Enhancers	Duodenum Mucosa	Duodenum
24	chr3:143305000-143306600	Enhancers	Colon Smooth Muscle	Colon
25	chr3:143305000-143310600	Weak transcription	Pancreas	Pancrea
26	chr3:143305200-143306200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr3:143305200-143312600	Weak transcription	Fetal Lung	lung
28	chr3:143305600-143306200	Enhancers	Brain Cingulate Gyrus	brain
29	chr3:143305600-143306400	Weak transcription	Colonic Mucosa	Colon
30	chr3:143305800-143309400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:143305800-143309600	Weak transcription	Fetal Intestine Large	intestine
32	chr3:143305800-143309600	Weak transcription	Fetal Intestine Small	intestine
33	chr3:143306000-143307800	Enhancers	Dnd41	blood
34	chr3:143306000-143308200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:143306000-143309400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:143306000-143309400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr3:143306000-143310400	Weak transcription	Stomach Mucosa	stomach
38	chr3:143306000-143314000	Weak transcription	Monocytes-CD14+_RO01746	blood

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