Variant report

Variant	rs56158046
Chromosome Location	chr12:120145987-120145988
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12099484	1.00[EUR][1000 genomes]
rs56079847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56697245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57064879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60243987	1.00[EUR][1000 genomes]
rs60295384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61234930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61633983	1.00[EUR][1000 genomes]
rs7133714	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7136842	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7302460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7976894	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120108200-120161000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
3	chr12:120119600-120147000	Weak transcription	Brain Substantia Nigra	brain
4	chr12:120119800-120149800	Weak transcription	Placenta	Placenta
5	chr12:120120200-120148000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr12:120121000-120151800	Weak transcription	Primary T cells from cord blood	blood
7	chr12:120121200-120173400	Weak transcription	Primary B cells from cord blood	blood
8	chr12:120122200-120160800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr12:120123400-120182000	Strong transcription	Dnd41	blood
10	chr12:120126000-120154000	Weak transcription	Right Ventricle	heart
11	chr12:120126400-120150000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:120126600-120158000	Weak transcription	Colonic Mucosa	Colon
13	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr12:120131200-120154200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr12:120131200-120161600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr12:120131600-120154400	Weak transcription	Small Intestine	intestine
17	chr12:120132200-120151200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr12:120132200-120152400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr12:120132400-120146000	Weak transcription	Brain Germinal Matrix	brain
20	chr12:120132400-120151400	Weak transcription	Pancreas	Pancrea
21	chr12:120132400-120153400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr12:120132800-120162000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr12:120133000-120147800	Weak transcription	Stomach Mucosa	stomach
24	chr12:120134800-120154400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:120135800-120148000	Weak transcription	Esophagus	oesophagus
26	chr12:120136000-120147800	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:120136000-120151200	Weak transcription	Gastric	stomach
28	chr12:120136000-120156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr12:120137000-120159800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr12:120138000-120147200	Weak transcription	Fetal Kidney	kidney
31	chr12:120138200-120147600	Weak transcription	Fetal Intestine Large	intestine
32	chr12:120139600-120159600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr12:120139800-120146600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr12:120139800-120146600	Weak transcription	K562	blood
35	chr12:120139800-120147600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr12:120139800-120147600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr12:120140000-120146000	Weak transcription	GM12878-XiMat	blood
38	chr12:120140200-120148600	Weak transcription	Fetal Lung	lung
39	chr12:120140200-120149400	Weak transcription	Lung	lung
40	chr12:120141000-120159600	Strong transcription	Fetal Thymus	thymus
41	chr12:120142200-120147200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr12:120142400-120146000	Weak transcription	Fetal Muscle Leg	muscle
43	chr12:120142400-120147000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr12:120142400-120148400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr12:120142600-120146000	Weak transcription	NHLF	lung
46	chr12:120142600-120146600	Weak transcription	NH-A	brain
47	chr12:120142600-120147000	Weak transcription	HepG2	liver
48	chr12:120142600-120147200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr12:120142600-120147600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr12:120142600-120147600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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