Variant report

Variant	rs7133714
Chromosome Location	chr12:120141547-120141548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:120140527..120144777-chr12:120146433..120151524,7	MCF-7	breast:
2	chr12:120137270..120138923-chr12:120140733..120142675,2	K562	blood:
3	chr12:120134899..120136482-chr12:120141154..120143008,2	K562	blood:
4	chr12:120140732..120143749-chr12:120148419..120151327,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122966	Chromatin interaction
ENSG00000255692	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12099484	1.00[EUR][1000 genomes]
rs56079847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56158046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56697245	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57064879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60243987	1.00[EUR][1000 genomes]
rs60295384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61234930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61633983	1.00[EUR][1000 genomes]
rs7136842	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7297192	1.00[MEX][hapmap]
rs7297487	1.00[MEX][hapmap]
rs7302460	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7976894	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7133714	EGR2	trans	brain	seeQTL
rs7133714	FOS	trans	brain	seeQTL
rs7133714	PTGS2	trans	brain	seeQTL

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120108200-120161000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:120116800-120201800	Weak transcription	Fetal Heart	heart
3	chr12:120117000-120145800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr12:120119600-120147000	Weak transcription	Brain Substantia Nigra	brain
5	chr12:120119800-120149800	Weak transcription	Placenta	Placenta
6	chr12:120120200-120148000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr12:120120400-120145600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:120121000-120151800	Weak transcription	Primary T cells from cord blood	blood
9	chr12:120121200-120173400	Weak transcription	Primary B cells from cord blood	blood
10	chr12:120122200-120160800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:120123400-120182000	Strong transcription	Dnd41	blood
12	chr12:120126000-120154000	Weak transcription	Right Ventricle	heart
13	chr12:120126400-120150000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr12:120126600-120158000	Weak transcription	Colonic Mucosa	Colon
15	chr12:120127600-120143200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr12:120130800-120182200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:120131200-120154200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr12:120131200-120161600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:120131600-120142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:120131600-120154400	Weak transcription	Small Intestine	intestine
21	chr12:120131800-120141800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr12:120131800-120142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr12:120132000-120145400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr12:120132200-120151200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr12:120132200-120152400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr12:120132400-120146000	Weak transcription	Brain Germinal Matrix	brain
27	chr12:120132400-120151400	Weak transcription	Pancreas	Pancrea
28	chr12:120132400-120153400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:120132800-120162000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr12:120133000-120147800	Weak transcription	Stomach Mucosa	stomach
31	chr12:120133600-120142600	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr12:120133800-120142000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr12:120133800-120142000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr12:120133800-120142400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:120133800-120142600	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr12:120134200-120142800	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr12:120134800-120154400	Strong transcription	HUES6 Cell Line	embryonic stem cell
38	chr12:120135000-120142800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr12:120135800-120148000	Weak transcription	Esophagus	oesophagus
40	chr12:120136000-120141600	Weak transcription	HSMM	muscle
41	chr12:120136000-120142000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr12:120136000-120145800	Weak transcription	HMEC	breast
43	chr12:120136000-120147800	Weak transcription	Brain Hippocampus Middle	brain
44	chr12:120136000-120151200	Weak transcription	Gastric	stomach
45	chr12:120136000-120156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr12:120136200-120141600	Weak transcription	Osteobl	bone
47	chr12:120137000-120142200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:120137000-120142600	Strong transcription	Thymus	Thymus
49	chr12:120137000-120143600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr12:120137000-120159800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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