Variant report

Variant	rs561598770
Chromosome Location	chr1:179417791-179417792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr1:179417675-179418305	K562	blood:	n/a	n/a
2	CCNT2	chr1:179417639-179417843	K562	blood:	n/a	n/a
3	BHLHE40	chr1:179417644-179417794	K562	blood:	n/a	chr1:179417771-179417787
4	CTCF	chr1:179417603-179417829	K562	blood:	n/a	n/a
5	MYC	chr1:179417591-179418148	K562	blood:	n/a	n/a
6	RCOR1	chr1:179417737-179418238	K562	blood:	n/a	n/a
7	HMGN3	chr1:179417615-179417840	K562	blood:	n/a	n/a
8	RAD21	chr1:179417692-179417856	K562	blood:	n/a	n/a
9	MAX	chr1:179417523-179417854	K562	blood:	n/a	n/a
10	CTCF	chr1:179417700-179417850	K562	blood:	n/a	n/a
11	MAX	chr1:179417629-179417860	K562	blood:	n/a	n/a
12	UBTF	chr1:179417616-179417838	K562	blood:	n/a	n/a
13	ARID3A	chr1:179417315-179418149	K562	blood:	n/a	n/a
14	MAZ	chr1:179417759-179417834	K562	blood:	n/a	n/a
15	E2F6	chr1:179417649-179417864	K562	blood:	n/a	chr1:179417754-179417763
16	MAX	chr1:179417610-179417825	K562	blood:	n/a	n/a

No data

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SOAT1-3	chr1:179417648-179417966	NONHSAT007860
2	lnc-SOAT1-3	chr1:179417648-179417967	NONHSAT007859

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv946523	chr1:179417249-179426389	Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179417600-179418000	Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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