Variant report

Variant	rs56162843
Chromosome Location	chr11:73345009-73345010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs34921806	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35686018	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35854818	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788366	0.84[EUR][1000 genomes]
rs56321536	0.82[EUR][1000 genomes]
rs7111217	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7935178	1.00[ASN][1000 genomes]
rs7946127	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73337400-73346000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:73344200-73346800	Enhancers	Primary T cells from cord blood	blood
3	chr11:73344400-73346200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr11:73344400-73346400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr11:73344600-73346000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr11:73344600-73346000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:73344600-73346400	Enhancers	Fetal Thymus	thymus
8	chr11:73344800-73345200	Weak transcription	Brain Anterior Caudate	brain
9	chr11:73344800-73345400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:73345000-73345600	Enhancers	Dnd41	blood
11	chr11:73345000-73345800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr11:73345000-73346200	Enhancers	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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