Variant report

Variant	rs7946127
Chromosome Location	chr11:73341588-73341589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12791140	0.96[AMR][1000 genomes]
rs12799377	0.96[AMR][1000 genomes]
rs34302239	0.96[AMR][1000 genomes]
rs34375414	0.96[AMR][1000 genomes]
rs34921806	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34963286	0.96[AMR][1000 genomes]
rs35132278	0.96[AMR][1000 genomes]
rs35427699	0.87[AMR][1000 genomes]
rs35435292	1.00[AMR][1000 genomes]
rs35455701	0.96[AMR][1000 genomes]
rs35686018	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35749087	0.82[AMR][1000 genomes]
rs35820405	0.96[AMR][1000 genomes]
rs35854818	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35905244	0.87[AMR][1000 genomes]
rs35922896	0.96[AMR][1000 genomes]
rs55788366	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56162843	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56321536	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7111217	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479535	0.96[AMR][1000 genomes]
rs71479536	0.87[AMR][1000 genomes]
rs7932786	0.87[AMR][1000 genomes]
rs7935178	1.00[ASN][1000 genomes]
rs7940050	0.96[AMR][1000 genomes]
rs7948050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395161	chr11:73084616-73461577	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv530624	chr11:73114283-73646329	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1045149	chr11:73314565-73581908	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73337400-73344000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:73337400-73346000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:73339800-73344200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:73340600-73341600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr11:73340600-73343200	Weak transcription	Fetal Thymus	thymus
6	chr11:73340800-73344000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:73341000-73341600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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