Variant report

Variant	rs56163905
Chromosome Location	chr6:70612428-70612429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10428870	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547783	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868360	0.89[EUR][1000 genomes]
rs17689265	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17689448	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17709736	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745952	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2096059	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096060	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096061	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2345783	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56978419	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57358062	0.88[EUR][1000 genomes]
rs60536675	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901568	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6903986	1.00[ASN][1000 genomes]
rs6929367	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480069	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446176	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454918	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9454920	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767586	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70604400-70617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:70605200-70616000	Weak transcription	Fetal Stomach	stomach
3	chr6:70605600-70627800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:70606000-70613400	Weak transcription	GM12878-XiMat	blood
5	chr6:70609800-70616400	Strong transcription	Primary B cells from peripheral blood	blood
6	chr6:70609800-70616800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:70610800-70618200	Strong transcription	Primary B cells from cord blood	blood

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