Variant report

Variant	rs17745952
Chromosome Location	chr6:70616733-70616734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10428870	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1417577	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1547783	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs16868360	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17689265	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17689448	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17709736	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2096059	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2096060	0.90[CEU][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2096061	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2345783	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs3793025	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs3793028	0.85[ASN][1000 genomes]
rs3793034	0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs3805969	0.85[ASN][1000 genomes]
rs3805975	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs3805979	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs3805980	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs3805983	0.90[ASN][1000 genomes]
rs3828763	0.85[ASN][1000 genomes]
rs3828764	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs3828765	0.90[ASN][1000 genomes]
rs56163905	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56978419	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57358062	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60536675	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6901568	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6910705	0.85[ASN][1000 genomes]
rs6912522	0.85[ASN][1000 genomes]
rs6929367	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6932082	0.90[ASN][1000 genomes]
rs73480069	0.85[EUR][1000 genomes]
rs73746842	0.85[ASN][1000 genomes]
rs7747604	1.00[CEU][hapmap];0.84[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9446176	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9446180	0.82[ASN][1000 genomes]
rs9454918	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9454920	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9454921	0.81[CEU][hapmap]
rs9454936	0.85[ASN][1000 genomes]
rs9767586	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70604400-70617800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:70605600-70627800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:70609800-70616800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:70610800-70618200	Strong transcription	Primary B cells from cord blood	blood
5	chr6:70615200-70622400	Weak transcription	GM12878-XiMat	blood
6	chr6:70616000-70617800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:70616400-70622400	Weak transcription	Primary B cells from peripheral blood	blood

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