Variant report

Variant	rs3793025
Chromosome Location	chr6:70670936-70670937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70669047..70671933-chr6:70674110..70676745,3	MCF-7	breast:
2	chr6:70661572..70663140-chr6:70670607..70672802,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16868360	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17745952	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs3793028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3793034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3793037	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3805969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805975	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805980	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805983	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3828763	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828764	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828765	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57358062	0.97[ASN][1000 genomes]
rs6910705	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6912522	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6932082	0.90[ASN][1000 genomes]
rs73746842	1.00[ASN][1000 genomes]
rs9364072	1.00[EUR][1000 genomes]
rs9364073	1.00[EUR][1000 genomes]
rs9446180	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9454936	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv463151	chr6:70625166-70694162	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603636	chr6:70625166-70694162	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70654200-70671400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:70659200-70672000	Weak transcription	GM12878-XiMat	blood
3	chr6:70664400-70671800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:70668200-70671200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:70669400-70676000	Strong transcription	Primary B cells from cord blood	blood
6	chr6:70669600-70673800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr6:70670800-70671600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:70670800-70672000	Enhancers	HSMM	muscle
9	chr6:70670800-70672200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:70670800-70672200	Enhancers	HSMMtube	muscle

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