Variant report

Variant	rs3805980
Chromosome Location	chr6:70697726-70697727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16868360	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17745952	0.86[CHB][hapmap];0.90[ASN][1000 genomes]
rs3793025	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3793028	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3793034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3793037	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs3805969	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805975	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805979	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3828763	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3828764	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3828765	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57358062	0.88[ASN][1000 genomes]
rs6910705	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6912522	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932082	1.00[ASN][1000 genomes]
rs73746842	0.90[ASN][1000 genomes]
rs9364072	1.00[EUR][1000 genomes]
rs9364073	1.00[EUR][1000 genomes]
rs9446180	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9454936	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70686600-70704200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:70686800-70698200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:70696600-70704000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:70697600-70699000	Enhancers	GM12878-XiMat	blood

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