Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10911756	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11576129	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11576884	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11581960	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11583193	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11586588	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586605	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12029108	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12046138	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12048982	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12402146	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12402607	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2295792	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28776539	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41453048	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56822355	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72727706	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727712	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72727717	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72727728	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74132957	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7518777	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185540600-185551200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:185544000-185547000	Weak transcription	Primary B cells from cord blood	blood
3	chr1:185544000-185547600	Weak transcription	HSMMtube	muscle
4	chr1:185546000-185549200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search: