Variant report

Variant	rs56165327
Chromosome Location	chr7:124288241-124288242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11972069	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972399	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11982845	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4295588	0.85[AMR][1000 genomes]
rs56313023	0.85[AMR][1000 genomes]
rs73221429	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73221438	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73221440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73719017	0.85[AMR][1000 genomes]
rs73719018	0.85[AMR][1000 genomes]
rs7783105	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785537	0.85[AMR][1000 genomes]
rs7797156	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56165327	LOC90784	trans	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124284800-124289000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:124285200-124289400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr7:124286200-124289400	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:124287600-124289000	Enhancers	Fetal Lung	lung
5	chr7:124287600-124289400	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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