Variant report

Variant	rs7783105
Chromosome Location	chr7:124287515-124287516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11972069	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11972399	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11982845	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56165327	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221429	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73221438	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73221440	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124271400-124287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:124284600-124287600	Weak transcription	Fetal Lung	lung
3	chr7:124284800-124289000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:124285200-124289400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr7:124286200-124289400	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:124287200-124287600	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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