Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1408137	0.90[AMR][1000 genomes]
rs17519798	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886138	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4912174	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4997596	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55733745	0.90[AMR][1000 genomes]
rs55757801	0.90[AMR][1000 genomes]
rs56016455	0.90[AMR][1000 genomes]
rs68051884	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs723714	0.90[AMR][1000 genomes]
rs72666110	0.90[AMR][1000 genomes]
rs72666111	0.90[AMR][1000 genomes]
rs72666112	0.90[AMR][1000 genomes]
rs72666114	0.90[AMR][1000 genomes]
rs72666115	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72666118	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72666122	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72666124	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72666127	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72666129	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72666132	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72666134	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72666135	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666137	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72666141	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58332200-58333800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr1:58332200-58334400	Enhancers	Fetal Intestine Small	intestine
3	chr1:58332200-58340400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:58332400-58333800	Enhancers	Stomach Mucosa	stomach
5	chr1:58332600-58335600	Enhancers	Fetal Intestine Large	intestine

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