Variant report
| Variant | rs72666137 |
|---|---|
| Chromosome Location | chr1:58336578-58336579 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1408137 | 0.87[AMR][1000 genomes] |
| rs17519798 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1886138 | 0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4912174 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4997596 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs55733745 | 0.87[AMR][1000 genomes] |
| rs55757801 | 0.87[AMR][1000 genomes] |
| rs56016455 | 0.87[AMR][1000 genomes] |
| rs56171994 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs68051884 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs723714 | 0.87[AMR][1000 genomes] |
| rs72666110 | 0.87[AMR][1000 genomes] |
| rs72666111 | 0.87[AMR][1000 genomes] |
| rs72666112 | 0.87[AMR][1000 genomes] |
| rs72666114 | 0.87[AMR][1000 genomes] |
| rs72666115 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72666118 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72666122 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72666124 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72666127 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72666129 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72666132 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72666134 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs72666135 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72666141 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015057 | chr1:57976993-58793962 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv530017 | chr1:58002290-58669736 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv431379 | chr1:58224212-58802608 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv829937 | chr1:58258288-58406506 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:58332200-58340400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
