Variant report

Variant	rs56174146
Chromosome Location	chr7:121379368-121379369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:121377905..121379517-chr7:121381874..121383801,2	K562	blood:
2	chr7:121377945..121379502-chr7:121478524..121480227,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10488054	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10953941	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10953943	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10953944	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10953946	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11764208	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12536101	0.89[EUR][1000 genomes]
rs12539525	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12668960	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12673165	0.89[EUR][1000 genomes]
rs1476925	0.89[EUR][1000 genomes]
rs1476926	0.89[EUR][1000 genomes]
rs17143719	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17143727	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55640247	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55777148	0.89[EUR][1000 genomes]
rs57178887	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483937	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59810075	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474155	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62475665	0.89[EUR][1000 genomes]
rs62475691	0.89[EUR][1000 genomes]
rs62475692	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62475693	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62475694	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6961819	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6975770	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7457523	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7806895	0.89[EUR][1000 genomes]
rs9640803	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv608333	chr7:121132213-121379616	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121376600-121381400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:121377000-121381200	Weak transcription	NHEK	skin
3	chr7:121379200-121379600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:121379200-121379800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:121379200-121379800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:121379200-121380000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:121379200-121380000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:121379200-121380000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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