Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10488054	0.89[EUR][1000 genomes]
rs10953941	0.92[EUR][1000 genomes]
rs10953943	0.92[EUR][1000 genomes]
rs10953944	0.89[EUR][1000 genomes]
rs10953946	0.89[EUR][1000 genomes]
rs11764208	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12536101	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12539525	0.92[EUR][1000 genomes]
rs12668960	0.89[EUR][1000 genomes]
rs12673165	0.88[EUR][1000 genomes]
rs1476925	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1476926	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17143719	0.92[EUR][1000 genomes]
rs17143727	0.91[EUR][1000 genomes]
rs55640247	0.92[EUR][1000 genomes]
rs55777148	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56174146	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59483937	0.89[EUR][1000 genomes]
rs59810075	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474155	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62475665	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62475691	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62475692	0.89[EUR][1000 genomes]
rs62475693	0.89[EUR][1000 genomes]
rs62475694	0.89[EUR][1000 genomes]
rs6961819	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6975770	0.92[EUR][1000 genomes]
rs7457523	0.89[EUR][1000 genomes]
rs7806895	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9640803	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv3398897	chr7:121379666-121381964	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121376600-121381400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:121377000-121381200	Weak transcription	NHEK	skin
3	chr7:121379200-121380000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:121379200-121380000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr7:121379200-121380000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr7:121379400-121380000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:121379600-121380000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:121379600-121382000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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