Variant report

Variant	rs56174160
Chromosome Location	chr6:36683295-36683296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11967043	1.00[EUR][1000 genomes]
rs236409	1.00[EUR][1000 genomes]
rs34901271	1.00[EUR][1000 genomes]
rs61244324	1.00[AMR][1000 genomes]
rs6907251	1.00[EUR][1000 genomes]
rs6912465	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36671800-36694000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:36672200-36693600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:36677000-36694000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:36680000-36684000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:36681400-36688800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:36682000-36686400	Strong transcription	Spleen	Spleen
8	chr6:36682000-36686800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:36682200-36686200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:36682400-36687000	Weak transcription	GM12878-XiMat	blood
11	chr6:36682800-36683600	Weak transcription	Esophagus	oesophagus
12	chr6:36682800-36684400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:36683200-36683400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:36683200-36683600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr6:36683200-36683800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:36683200-36683800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:36683200-36686400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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