Variant report

Variant	rs61244324
Chromosome Location	chr6:36765200-36765201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36764128..36766707-chr6:36770890..36775341,3	K562	blood:
2	chr6:36762637..36765531-chr6:36766725..36768709,2	MCF-7	breast:
3	chr6:36763716..36766678-chr6:36824320..36826178,2	K562	blood:
4	chr6:36763852..36766852-chr6:36816015..36817919,3	K562	blood:
5	chr6:36764697..36766707-chr6:36770916..36775341,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56174160	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv991181	chr6:36757252-36768835	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
2	chr6:36762000-36772200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:36762000-36772800	Weak transcription	Fetal Brain Female	brain
4	chr6:36762400-36772200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:36762600-36771000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:36762600-36773000	Weak transcription	Right Ventricle	heart
7	chr6:36762600-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:36762800-36768200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:36762800-36772600	Weak transcription	Brain Anterior Caudate	brain
10	chr6:36762800-36772600	Weak transcription	HUVEC	blood vessel
11	chr6:36763000-36765200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:36763000-36766400	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:36763200-36769000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:36763600-36771600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:36764400-36767200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:36764400-36768200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:36764400-36773000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:36765000-36766400	Strong transcription	Brain Angular Gyrus	brain
19	chr6:36765000-36768800	Strong transcription	Fetal Stomach	stomach
20	chr6:36765200-36767800	Strong transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links