Variant report

Variant	rs561742646
Chromosome Location	chr17:15851293-15851294
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:15850283..15852272-chr17:15862525..15865065,2	K562	blood:
2	chr17:15842605..15845101-chr17:15849558..15852028,2	K562	blood:
3	chr17:15848433..15851819-chr17:15861241..15867680,6	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
8	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
12	nsv1061987	chr17:15810017-15855135	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv907707	chr17:15846535-15950751	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	esv3347852	chr17:15850852-15851693	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv907709	chr17:15851196-15937487	Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
16	nsv907708	chr17:15851196-15950751	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15849000-15852000	Enhancers	Spleen	Spleen
2	chr17:15849400-15851400	Bivalent Enhancer	Fetal Stomach	stomach
3	chr17:15849400-15852200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr17:15849600-15851800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:15849600-15852000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:15849600-15852000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr17:15849600-15852200	Enhancers	Stomach Mucosa	stomach
8	chr17:15849600-15860600	Weak transcription	Pancreas	Pancrea
9	chr17:15849800-15851400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr17:15849800-15851600	Flanking Active TSS	HepG2	liver
11	chr17:15849800-15852000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
12	chr17:15849800-15852000	Active TSS	Rectal Smooth Muscle	rectum
13	chr17:15849800-15852200	Enhancers	Placenta	Placenta
14	chr17:15849800-15852200	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr17:15850000-15851400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr17:15850000-15851400	Enhancers	HSMM	muscle
17	chr17:15850000-15851600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr17:15850000-15851600	Flanking Active TSS	Colonic Mucosa	Colon
19	chr17:15850000-15852200	Enhancers	Fetal Intestine Large	intestine
20	chr17:15850000-15852200	Enhancers	Hela-S3	cervix
21	chr17:15850000-15852200	Flanking Active TSS	HMEC	breast
22	chr17:15850200-15851400	Enhancers	HSMMtube	muscle
23	chr17:15850200-15851600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr17:15850200-15851600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
25	chr17:15850200-15852200	Enhancers	Esophagus	oesophagus
26	chr17:15850200-15854600	Weak transcription	Right Ventricle	heart
27	chr17:15850200-15859200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr17:15850200-15860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr17:15850400-15851400	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr17:15850400-15851600	Enhancers	Fetal Muscle Leg	muscle
31	chr17:15850400-15852200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr17:15850400-15856600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr17:15850600-15851400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr17:15850600-15851600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr17:15850600-15851600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr17:15850600-15851600	Enhancers	Fetal Intestine Small	intestine
37	chr17:15850600-15852000	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr17:15850800-15851400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr17:15850800-15851400	Enhancers	Osteobl	bone
40	chr17:15850800-15851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr17:15850800-15851600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr17:15850800-15852000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr17:15850800-15852000	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr17:15850800-15852000	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr17:15850800-15852000	Enhancers	NH-A	brain
46	chr17:15850800-15852200	Enhancers	K562	blood
47	chr17:15851000-15851600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr17:15851000-15851600	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr17:15851000-15851800	Weak transcription	Lung	lung
50	chr17:15851000-15852200	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links