Variant report

Variant	rs56175710
Chromosome Location	chr8:102657510-102657511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102657037..102659278-chr8:102659929..102662288,2	MCF-7	breast:
2	chr8:102503159..102506071-chr8:102657015..102659448,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1892753	0.82[AFR][1000 genomes]
rs1892755	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1892756	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1892757	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2387623	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4317540	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734030	0.83[AMR][1000 genomes]
rs56277720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644600-102663800	Weak transcription	Lung	lung
2	chr8:102644800-102674600	Weak transcription	Ovary	ovary
3	chr8:102648600-102663600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:102650600-102664400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:102650800-102662400	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr8:102650800-102664600	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:102651200-102658800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
9	chr8:102652200-102658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:102652800-102657800	Weak transcription	Fetal Heart	heart
11	chr8:102653200-102658600	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:102653200-102661000	Strong transcription	Placenta Amnion	Placenta Amnion
13	chr8:102654000-102658600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:102655000-102661800	Strong transcription	Fetal Intestine Small	intestine
15	chr8:102655200-102658400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:102655200-102658400	Weak transcription	Hela-S3	cervix
17	chr8:102655200-102663800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:102655200-102669400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:102655600-102658200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr8:102655600-102661800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:102655600-102664400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:102655600-102664400	Strong transcription	Duodenum Mucosa	Duodenum
23	chr8:102655800-102658000	Strong transcription	Esophagus	oesophagus
24	chr8:102655800-102662000	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr8:102656000-102658000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:102656000-102658600	Strong transcription	Placenta	Placenta
27	chr8:102656400-102663800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:102656600-102660200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr8:102656600-102660800	Weak transcription	Colonic Mucosa	Colon
30	chr8:102657000-102658400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:102657000-102658400	Weak transcription	Fetal Intestine Large	intestine
32	chr8:102657000-102658400	Weak transcription	NHEK	skin
33	chr8:102657000-102659000	Weak transcription	Pancreas	Pancrea
34	chr8:102657000-102661600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr8:102657200-102657800	Weak transcription	GM12878-XiMat	blood
36	chr8:102657200-102660200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr8:102657200-102661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:102657200-102668200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr8:102657400-102657800	Weak transcription	Gastric	stomach
40	chr8:102657400-102657800	Weak transcription	HMEC	breast
41	chr8:102657400-102658000	Strong transcription	Fetal Stomach	stomach

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