Variant report

Variant	rs1892757
Chromosome Location	chr8:102660099-102660100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102657037..102659278-chr8:102659929..102662288,2	MCF-7	breast:
2	chr8:102652172..102654283-chr8:102658129..102660211,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10955266	0.81[EUR][1000 genomes]
rs1111881	0.82[AFR][1000 genomes]
rs1125589	0.81[EUR][1000 genomes]
rs16868198	0.83[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1892753	0.97[AFR][1000 genomes]
rs1892755	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1892756	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2387623	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3735714	0.89[JPT][hapmap]
rs4317540	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56175710	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56277720	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7017592	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644600-102663800	Weak transcription	Lung	lung
2	chr8:102644800-102674600	Weak transcription	Ovary	ovary
3	chr8:102648600-102663600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:102650600-102664400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:102650800-102662400	Strong transcription	H1 Cell Line	embryonic stem cell
6	chr8:102650800-102664600	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
8	chr8:102653200-102661000	Strong transcription	Placenta Amnion	Placenta Amnion
9	chr8:102655000-102661800	Strong transcription	Fetal Intestine Small	intestine
10	chr8:102655200-102663800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:102655200-102669400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:102655600-102661800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:102655600-102664400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:102655600-102664400	Strong transcription	Duodenum Mucosa	Duodenum
15	chr8:102655800-102662000	Strong transcription	H9 Cell Line	embryonic stem cell
16	chr8:102656400-102663800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr8:102656600-102660200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:102656600-102660800	Weak transcription	Colonic Mucosa	Colon
19	chr8:102657000-102661600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:102657200-102660200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:102657200-102661600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:102657200-102668200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:102658000-102660400	Weak transcription	Fetal Stomach	stomach
24	chr8:102658000-102661200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:102658200-102660200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:102658400-102660600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:102658400-102661800	Strong transcription	Fetal Intestine Large	intestine
28	chr8:102658400-102661800	Strong transcription	Gastric	stomach
29	chr8:102658400-102663000	Strong transcription	NHEK	skin
30	chr8:102658600-102665800	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr8:102658800-102662000	Strong transcription	Esophagus	oesophagus
32	chr8:102659000-102660200	Weak transcription	Fetal Muscle Leg	muscle
33	chr8:102659000-102660200	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:102659000-102661800	Strong transcription	Pancreas	Pancrea
35	chr8:102659000-102664400	Strong transcription	Placenta	Placenta
36	chr8:102659200-102660200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr8:102659200-102660200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:102659200-102660200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:102659200-102660200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr8:102659200-102660400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:102659200-102662400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr8:102659200-102663400	Weak transcription	Right Atrium	heart
43	chr8:102659200-102679400	Weak transcription	HMEC	breast
44	chr8:102659400-102660400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links