Variant report

Variant	rs10955266
Chromosome Location	chr8:102646059-102646060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102503148..102509288-chr8:102639386..102649682,19	MCF-7	breast:
2	chr8:102447454..102450323-chr8:102645181..102647136,2	MCF-7	breast:
3	chr8:102557068..102559432-chr8:102644756..102646494,2	MCF-7	breast:
4	chr8:102617550..102620194-chr8:102645723..102647723,2	MCF-7	breast:
5	chr8:102579608..102581495-chr8:102645973..102648635,2	MCF-7	breast:
6	chr8:102518050..102520843-chr8:102644684..102646400,2	MCF-7	breast:
7	chr8:102643444..102646539-chr8:102648297..102653448,5	MCF-7	breast:
8	chr8:102499850..102508532-chr8:102642696..102652505,26	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10955264	0.81[ASN][1000 genomes]
rs1125589	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1131862	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1131863	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs11991426	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs13264047	0.82[EUR][1000 genomes]
rs1357984	0.84[CHD][hapmap]
rs16868201	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1892756	0.81[EUR][1000 genomes]
rs1892757	0.81[EUR][1000 genomes]
rs2032118	0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387623	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs3824090	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs3824091	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4317540	0.81[CEU][hapmap];0.84[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.84[EUR][1000 genomes]
rs4734030	0.86[CEU][hapmap];0.81[GIH][hapmap]
rs56277720	0.84[EUR][1000 genomes]
rs6468785	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6989650	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6992430	0.84[CHD][hapmap]
rs7017592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs755468	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757285	chr8:102609474-102649681	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759635	chr8:102609474-102649681	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2761235	chr8:102613079-102646059	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10955266	C8orf56	cis	parietal	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102619800-102656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:102636200-102646200	Weak transcription	Esophagus	oesophagus
3	chr8:102636400-102647200	Weak transcription	HMEC	breast
4	chr8:102636400-102648200	Weak transcription	Fetal Lung	lung
5	chr8:102636600-102646200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:102637000-102646200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:102637200-102647000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:102637600-102646200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:102642400-102647000	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:102643000-102647600	Weak transcription	Small Intestine	intestine
11	chr8:102643000-102650800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:102643600-102647400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr8:102643800-102646600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:102643800-102647200	Strong transcription	NHEK	skin
15	chr8:102643800-102650000	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:102644200-102647400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:102644400-102646200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:102644400-102648400	Weak transcription	Pancreas	Pancrea
19	chr8:102644600-102646200	Weak transcription	Fetal Intestine Large	intestine
20	chr8:102644600-102651200	Weak transcription	Gastric	stomach
21	chr8:102644600-102652200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:102644600-102663800	Weak transcription	Lung	lung
23	chr8:102644800-102646200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:102644800-102646200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:102644800-102646200	Weak transcription	Fetal Intestine Small	intestine
26	chr8:102644800-102646200	Weak transcription	Fetal Stomach	stomach
27	chr8:102644800-102647600	Weak transcription	A549	lung
28	chr8:102644800-102651400	Weak transcription	Fetal Kidney	kidney
29	chr8:102644800-102674600	Weak transcription	Ovary	ovary
30	chr8:102645000-102647800	Weak transcription	GM12878-XiMat	blood
31	chr8:102645000-102651600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr8:102645000-102656000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr8:102645200-102647400	Weak transcription	Stomach Mucosa	stomach
34	chr8:102645600-102653800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:102645600-102655600	Strong transcription	Placenta	Placenta
36	chr8:102645800-102648800	Enhancers	Colon Smooth Muscle	Colon
37	chr8:102646000-102646600	Enhancers	Stomach Smooth Muscle	stomach
38	chr8:102646000-102647200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:102646000-102647200	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr8:102646000-102649400	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr8:102646000-102649600	Strong transcription	Rectal Mucosa Donor 31	rectum
42	chr8:102646000-102652000	Strong transcription	HUES6 Cell Line	embryonic stem cell

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