Variant report

Variant	rs6468785
Chromosome Location	chr8:102712757-102712758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10955266	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1131862	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1131863	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11991426	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11994981	0.90[EUR][1000 genomes]
rs12548828	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12676557	0.86[EUR][1000 genomes]
rs16868138	0.82[EUR][1000 genomes]
rs16868198	0.83[CEU][hapmap]
rs16868201	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs16868262	0.82[CEU][hapmap]
rs16868264	0.82[CEU][hapmap]
rs2226401	0.82[CEU][hapmap]
rs28851296	0.81[EUR][1000 genomes]
rs28856107	0.82[EUR][1000 genomes]
rs35227396	0.86[EUR][1000 genomes]
rs3824090	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs3824091	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs4734037	0.88[EUR][1000 genomes]
rs4734570	0.86[EUR][1000 genomes]
rs4734571	0.84[EUR][1000 genomes]
rs59320315	0.88[EUR][1000 genomes]
rs62517420	0.91[EUR][1000 genomes]
rs62517427	0.82[EUR][1000 genomes]
rs6468784	0.88[EUR][1000 genomes]
rs6989650	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs6992663	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7010161	0.81[ASN][1000 genomes]
rs7017592	0.86[JPT][hapmap]
rs7386202	0.88[EUR][1000 genomes]
rs755468	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7829633	0.87[EUR][1000 genomes]
rs7829786	0.86[EUR][1000 genomes]
rs9297307	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
2	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
4	chr8:102701200-102713200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr8:102702000-102715600	Weak transcription	Pancreas	Pancrea
6	chr8:102702400-102713000	Weak transcription	Lung	lung
7	chr8:102703800-102713000	Weak transcription	Left Ventricle	heart
8	chr8:102704200-102713200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:102705600-102715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:102706800-102713000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:102709000-102712800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:102709000-102713200	Weak transcription	Primary T cells from cord blood	blood
14	chr8:102711600-102713200	Weak transcription	Brain Anterior Caudate	brain
15	chr8:102712000-102712800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102712400-102712800	Enhancers	GM12878-XiMat	blood
17	chr8:102712400-102713000	Genic enhancers	Fetal Muscle Leg	muscle
18	chr8:102712400-102713600	Enhancers	Right Ventricle	heart
19	chr8:102712400-102714000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:102712400-102714000	Enhancers	Thymus	Thymus
21	chr8:102712400-102716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr8:102712600-102712800	Enhancers	Liver	Liver
23	chr8:102712600-102713400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:102712600-102713600	Enhancers	Brain Hippocampus Middle	brain
25	chr8:102712600-102713800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr8:102712600-102713800	Enhancers	Fetal Muscle Trunk	muscle
27	chr8:102712600-102713800	Enhancers	Placenta	Placenta
28	chr8:102712600-102713800	Enhancers	Fetal Stomach	stomach
29	chr8:102712600-102714000	Enhancers	Ovary	ovary
30	chr8:102712600-102714200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:102712600-102714200	Enhancers	Colon Smooth Muscle	Colon
32	chr8:102712600-102714200	Enhancers	Fetal Kidney	kidney
33	chr8:102712600-102714400	Enhancers	Primary hematopoietic stem cells	blood
34	chr8:102712600-102714800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr8:102712600-102714800	Enhancers	Fetal Thymus	thymus
36	chr8:102712600-102714800	Enhancers	Spleen	Spleen
37	chr8:102712600-102716600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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