Variant report

Variant	rs3824090
Chromosome Location	chr8:102679216-102679217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10955266	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1131862	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs1131863	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs11991426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12548828	0.94[CEU][hapmap]
rs16868198	0.94[CEU][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs16868201	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs16868262	0.82[CEU][hapmap]
rs16868264	0.82[CEU][hapmap]
rs2226401	0.82[CEU][hapmap]
rs3824091	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs6468785	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6989650	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs7017592	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs755468	0.81[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
2	chr8:102659200-102679400	Weak transcription	HMEC	breast
3	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
4	chr8:102670600-102680600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
6	chr8:102672800-102682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:102676200-102679800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:102676200-102680600	Strong transcription	Placenta	Placenta
9	chr8:102676200-102682200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:102676400-102679600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:102676400-102680400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:102676400-102681200	Strong transcription	Fetal Intestine Large	intestine
13	chr8:102676400-102681200	Strong transcription	Placenta Amnion	Placenta Amnion
14	chr8:102676600-102680200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:102676600-102680600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr8:102676600-102681200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr8:102676600-102681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:102676600-102682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:102676800-102679800	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr8:102676800-102680000	Strong transcription	Pancreas	Pancrea
21	chr8:102676800-102681200	Strong transcription	Gastric	stomach
22	chr8:102676800-102681400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr8:102677000-102679400	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr8:102677000-102679800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:102677400-102679800	Strong transcription	NHEK	skin
26	chr8:102677600-102680400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:102678000-102679800	Weak transcription	Fetal Muscle Leg	muscle
28	chr8:102678000-102680400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr8:102678600-102679400	Strong transcription	Colonic Mucosa	Colon
30	chr8:102678600-102680000	Strong transcription	Fetal Stomach	stomach
31	chr8:102678600-102680600	Strong transcription	Fetal Intestine Small	intestine
32	chr8:102678800-102680400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
33	chr8:102678800-102680800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:102678800-102681000	Strong transcription	Esophagus	oesophagus
35	chr8:102678800-102681400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:102678800-102683800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:102679000-102682600	Weak transcription	Lung	lung
38	chr8:102679200-102680600	Strong transcription	H9 Cell Line	embryonic stem cell

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