Variant report

Variant	rs6989650
Chromosome Location	chr8:102681337-102681338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102679834..102682568-chr8:103211962..103214498,2	MCF-7	breast:
2	chr8:102672754..102675270-chr8:102680844..102682730,2	MCF-7	breast:
3	chr8:102676339..102678674-chr8:102680968..102682901,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10955266	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1111881	0.88[EUR][1000 genomes]
rs1131862	1.00[CHB][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1131863	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.92[ASN][1000 genomes]
rs11991426	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11994981	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548828	0.94[CEU][hapmap]
rs12676557	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868138	0.90[EUR][1000 genomes]
rs16868198	0.94[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs16868201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868262	0.83[CEU][hapmap]
rs16868264	0.83[CEU][hapmap]
rs1892754	0.81[EUR][1000 genomes]
rs2226401	0.83[CEU][hapmap]
rs28851296	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28856107	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35227396	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824090	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs3824091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4317540	0.81[MEX][hapmap]
rs4734036	0.95[ASN][1000 genomes]
rs4734037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734570	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734571	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734580	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59320315	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62517420	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62517427	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62517441	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468784	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468785	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs7010161	0.84[ASN][1000 genomes]
rs7017592	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7386202	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs755468	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7822657	0.95[ASN][1000 genomes]
rs7829633	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7829786	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9297307	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
2	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
3	chr8:102672800-102682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:102676200-102682200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:102676600-102681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:102676600-102682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:102676800-102681400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr8:102678800-102681400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:102678800-102683800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:102679000-102682600	Weak transcription	Lung	lung
11	chr8:102679400-102681800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:102679800-102681400	Strong transcription	Fetal Muscle Leg	muscle
13	chr8:102679800-102683200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
14	chr8:102679800-102683800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr8:102680000-102681800	Weak transcription	HMEC	breast
16	chr8:102680000-102698000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:102680200-102682600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:102680200-102683400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr8:102680400-102682200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:102680400-102682400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:102680400-102682600	Weak transcription	Duodenum Mucosa	Duodenum
22	chr8:102680600-102682400	Weak transcription	Placenta	Placenta
23	chr8:102680600-102683400	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr8:102680800-102682800	Enhancers	Fetal Lung	lung
25	chr8:102680800-102683000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:102681000-102681400	Enhancers	Fetal Stomach	stomach
27	chr8:102681000-102681800	Weak transcription	Esophagus	oesophagus
28	chr8:102681200-102681400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
29	chr8:102681200-102682400	Weak transcription	Gastric	stomach
30	chr8:102681200-102682600	Weak transcription	Fetal Intestine Large	intestine
31	chr8:102681200-102682800	Strong transcription	Pancreas	Pancrea
32	chr8:102681200-102683200	Weak transcription	Placenta Amnion	Placenta Amnion

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