Variant report

Variant	rs7822657
Chromosome Location	chr8:102669468-102669469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102661081..102663898-chr8:102668064..102670538,3	MCF-7	breast:
2	chr8:102664289..102666765-chr8:102667718..102671185,4	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10808374	0.94[EUR][1000 genomes]
rs10955266	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10955269	0.97[EUR][1000 genomes]
rs1131862	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1131863	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11776907	0.87[EUR][1000 genomes]
rs11991426	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs11994981	0.95[ASN][1000 genomes]
rs12545764	0.94[EUR][1000 genomes]
rs12676557	0.99[ASN][1000 genomes]
rs12679729	0.95[EUR][1000 genomes]
rs16868201	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2032118	0.81[CHB][hapmap]
rs28851296	0.84[ASN][1000 genomes]
rs28856107	0.82[ASN][1000 genomes]
rs2892325	0.94[EUR][1000 genomes]
rs35227396	0.86[ASN][1000 genomes]
rs35285056	0.94[EUR][1000 genomes]
rs35365856	0.94[EUR][1000 genomes]
rs3824090	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs3824091	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4734036	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734037	1.00[ASN][1000 genomes]
rs4734567	0.97[EUR][1000 genomes]
rs4734568	0.93[EUR][1000 genomes]
rs4734569	0.92[EUR][1000 genomes]
rs4734570	1.00[ASN][1000 genomes]
rs4734571	1.00[ASN][1000 genomes]
rs62517420	0.95[ASN][1000 genomes]
rs62517427	0.85[ASN][1000 genomes]
rs62517441	0.95[ASN][1000 genomes]
rs6468784	0.95[ASN][1000 genomes]
rs6468785	0.88[CHB][hapmap];0.86[JPT][hapmap]
rs66837307	0.93[EUR][1000 genomes]
rs67377728	0.94[EUR][1000 genomes]
rs6989650	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6990400	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7003051	0.94[EUR][1000 genomes]
rs7010161	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7017592	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs755468	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7827945	0.93[EUR][1000 genomes]
rs9297307	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
3	chr8:102659200-102679400	Weak transcription	HMEC	breast
4	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
5	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
7	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:102664400-102676800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:102664800-102676800	Weak transcription	Gastric	stomach
11	chr8:102664800-102677000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:102665000-102670200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:102665000-102670200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:102665400-102676400	Weak transcription	Fetal Intestine Large	intestine
15	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
16	chr8:102667800-102669600	Strong transcription	Placenta	Placenta
17	chr8:102668200-102670800	Strong transcription	Pancreas	Pancrea
18	chr8:102668200-102671000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr8:102668200-102671200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr8:102668600-102670200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:102668600-102670400	Weak transcription	Esophagus	oesophagus
22	chr8:102668800-102670200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:102668800-102670200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:102668800-102674000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr8:102669000-102674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:102669200-102670200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:102669200-102670400	Weak transcription	NHEK	skin
28	chr8:102669200-102677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:102669400-102669600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:102669400-102670400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:102669400-102670400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr8:102669400-102676400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:102669400-102676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:102669400-102676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:102669400-102676600	Weak transcription	Rectal Mucosa Donor 31	rectum

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