Variant report

Variant	rs7003051
Chromosome Location	chr8:102664291-102664292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102664289..102666765-chr8:102667718..102671185,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093614	0.88[ASN][1000 genomes]
rs10808374	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955269	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1131862	1.00[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs1131863	1.00[CEU][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes]
rs11776907	0.90[EUR][1000 genomes]
rs12545764	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12679729	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2892325	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35285056	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35365856	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3824091	0.82[GIH][hapmap]
rs4317540	0.80[CHD][hapmap]
rs4734036	0.94[EUR][1000 genomes]
rs4734567	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4734568	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734569	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66837307	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67377728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6990400	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs7010161	0.88[EUR][1000 genomes]
rs7822657	0.94[EUR][1000 genomes]
rs7827945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3402975	chr8:102662576-102666774	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102650600-102664400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:102650800-102664600	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
5	chr8:102655200-102669400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:102655600-102664400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:102655600-102664400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr8:102657200-102668200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:102658600-102665800	Strong transcription	Rectal Mucosa Donor 31	rectum
10	chr8:102659000-102664400	Strong transcription	Placenta	Placenta
11	chr8:102659200-102679400	Weak transcription	HMEC	breast
12	chr8:102661200-102664400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
14	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:102661800-102668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
17	chr8:102662000-102664600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:102662000-102668200	Weak transcription	Esophagus	oesophagus
19	chr8:102662400-102668000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:102662600-102668400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:102663000-102667600	Weak transcription	NHEK	skin
22	chr8:102663000-102668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:102663600-102664800	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:102663800-102664400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:102663800-102664400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:102663800-102664400	Strong transcription	Fetal Intestine Small	intestine
28	chr8:102663800-102664400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr8:102663800-102664600	Strong transcription	H1 Cell Line	embryonic stem cell
30	chr8:102663800-102664800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:102663800-102664800	Genic enhancers	Gastric	stomach
32	chr8:102663800-102664800	Genic enhancers	Pancreas	Pancrea
33	chr8:102663800-102665400	Strong transcription	Fetal Intestine Large	intestine
34	chr8:102664000-102664400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:102664000-102664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:102664200-102664600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:102664200-102665400	Weak transcription	Placenta Amnion	Placenta Amnion

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