Variant report

Variant	rs10955269
Chromosome Location	chr8:102666008-102666009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102664289..102666765-chr8:102667718..102671185,4	MCF-7	breast:
2	chr8:102664916..102667894-chr8:102671918..102674454,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10808374	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1111881	0.93[ASN][1000 genomes]
rs1131862	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1131863	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11776907	0.89[EUR][1000 genomes]
rs12545764	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12679729	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16868138	0.97[ASN][1000 genomes]
rs1892754	0.86[ASN][1000 genomes]
rs2892325	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35285056	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35365856	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4734036	0.97[EUR][1000 genomes]
rs4734567	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734568	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4734569	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66837307	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67377728	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6990400	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7003051	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7010161	0.91[EUR][1000 genomes]
rs7822657	0.97[EUR][1000 genomes]
rs7827945	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3402975	chr8:102662576-102666774	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
3	chr8:102655200-102669400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:102657200-102668200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:102659200-102679400	Weak transcription	HMEC	breast
6	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
7	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:102661800-102668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
10	chr8:102662000-102668200	Weak transcription	Esophagus	oesophagus
11	chr8:102662400-102668000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:102662600-102668400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:102663000-102667600	Weak transcription	NHEK	skin
14	chr8:102663000-102668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:102664400-102667800	Weak transcription	Placenta	Placenta
17	chr8:102664400-102676800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
19	chr8:102664600-102668200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:102664800-102667000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:102664800-102668200	Weak transcription	Pancreas	Pancrea
22	chr8:102664800-102668400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:102664800-102676800	Weak transcription	Gastric	stomach
24	chr8:102664800-102677000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr8:102665000-102670200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:102665000-102670200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:102665400-102669400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr8:102665400-102676400	Weak transcription	Fetal Intestine Large	intestine
29	chr8:102665600-102668600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:102665800-102667600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:102665800-102668000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:102665800-102669000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:102666000-102668200	Weak transcription	Rectal Mucosa Donor 29	rectum

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