Variant report

Variant	rs7010161
Chromosome Location	chr8:102701972-102701973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10808374	0.88[EUR][1000 genomes]
rs10955269	0.91[EUR][1000 genomes]
rs1131862	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1131863	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11776907	0.81[EUR][1000 genomes]
rs11991426	0.88[ASN][1000 genomes]
rs11994981	0.84[ASN][1000 genomes]
rs12545764	0.88[EUR][1000 genomes]
rs12676557	0.83[ASN][1000 genomes]
rs12679729	0.89[EUR][1000 genomes]
rs16868201	0.91[ASN][1000 genomes]
rs2892325	0.90[EUR][1000 genomes]
rs35285056	0.88[EUR][1000 genomes]
rs35365856	0.88[EUR][1000 genomes]
rs4734036	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4734037	0.82[ASN][1000 genomes]
rs4734567	0.91[EUR][1000 genomes]
rs4734568	0.87[EUR][1000 genomes]
rs4734569	0.86[EUR][1000 genomes]
rs4734570	0.82[ASN][1000 genomes]
rs4734571	0.82[ASN][1000 genomes]
rs62517420	0.84[ASN][1000 genomes]
rs62517441	0.83[ASN][1000 genomes]
rs6468784	0.84[ASN][1000 genomes]
rs6468785	0.81[ASN][1000 genomes]
rs66837307	0.87[EUR][1000 genomes]
rs67377728	0.88[EUR][1000 genomes]
rs6989650	0.84[ASN][1000 genomes]
rs6990400	0.91[EUR][1000 genomes]
rs7003051	0.88[EUR][1000 genomes]
rs7822657	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7827945	0.87[EUR][1000 genomes]
rs9297307	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102683200-102702000	Weak transcription	Fetal Lung	lung
2	chr8:102696600-102704600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr8:102696600-102708400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:102696800-102702000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:102696800-102702000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:102697000-102703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:102697000-102706600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
9	chr8:102697800-102703000	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:102697800-102706800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr8:102698000-102702000	Strong transcription	Liver	Liver
12	chr8:102698000-102702000	Strong transcription	Stomach Smooth Muscle	stomach
13	chr8:102698000-102702400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:102698200-102706000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:102698400-102702000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102698600-102704600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr8:102698800-102705600	Weak transcription	Colonic Mucosa	Colon
18	chr8:102699000-102705800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:102699200-102702600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:102699400-102702200	Strong transcription	Primary T cells from cord blood	blood
21	chr8:102699600-102702200	Weak transcription	Left Ventricle	heart
22	chr8:102699600-102705200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr8:102700000-102702000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr8:102700000-102702000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:102700000-102704600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
28	chr8:102700200-102702800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr8:102700400-102702000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:102700400-102702000	Strong transcription	Fetal Muscle Leg	muscle
31	chr8:102700400-102702000	Strong transcription	Fetal Stomach	stomach
32	chr8:102700400-102702200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:102700400-102703000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:102700400-102706800	Weak transcription	Esophagus	oesophagus
35	chr8:102700600-102702000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:102700600-102702000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:102700600-102702800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:102700800-102702000	Strong transcription	Adipose Nuclei	Adipose
39	chr8:102701000-102702400	Enhancers	H1 Cell Line	embryonic stem cell
40	chr8:102701200-102702000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr8:102701200-102706200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr8:102701200-102713200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr8:102701400-102702600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr8:102701600-102702000	ZNF genes & repeats	Pancreas	Pancrea
45	chr8:102701600-102702400	ZNF genes & repeats	Lung	lung
46	chr8:102701600-102702400	Enhancers	Spleen	Spleen
47	chr8:102701600-102702800	Bivalent Enhancer	Placenta	Placenta
48	chr8:102701600-102705000	Enhancers	Ovary	ovary
49	chr8:102701600-102705400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr8:102701600-102708600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links