Variant report

Variant	rs62517420
Chromosome Location	chr8:102690091-102690092
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1111881	0.89[EUR][1000 genomes]
rs1131862	0.92[ASN][1000 genomes]
rs1131863	0.92[ASN][1000 genomes]
rs11991426	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11994981	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676557	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868138	0.91[EUR][1000 genomes]
rs16868198	0.86[EUR][1000 genomes]
rs16868201	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1892754	0.82[EUR][1000 genomes]
rs28851296	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28856107	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35227396	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824091	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734036	0.95[ASN][1000 genomes]
rs4734037	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734570	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734571	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734580	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59320315	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62517427	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62517441	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468784	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468785	0.91[EUR][1000 genomes]
rs6989650	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010161	0.84[ASN][1000 genomes]
rs7386202	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7822657	0.95[ASN][1000 genomes]
rs7829633	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7829786	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9297307	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
2	chr8:102680000-102698000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:102683200-102702000	Weak transcription	Fetal Lung	lung
4	chr8:102685600-102698000	Weak transcription	Aorta	Aorta
5	chr8:102688600-102697800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:102689200-102690200	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr8:102689400-102690200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:102689800-102690200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr8:102690000-102690200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links