Variant report

Variant	rs11994981
Chromosome Location	chr8:102690179-102690180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10955266	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1111881	0.88[EUR][1000 genomes]
rs1131862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1131863	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11991426	0.94[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs12676557	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16868138	0.90[EUR][1000 genomes]
rs16868198	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs16868201	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16868262	0.87[CEU][hapmap]
rs16868264	0.87[CEU][hapmap]
rs1892754	0.81[EUR][1000 genomes]
rs2226401	0.87[CEU][hapmap]
rs28851296	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28856107	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35227396	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3824090	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3824091	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734036	0.95[ASN][1000 genomes]
rs4734037	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734570	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734571	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734580	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59320315	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62517420	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62517427	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62517441	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6468784	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468785	0.94[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs6989650	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010161	0.84[ASN][1000 genomes]
rs7017592	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7386202	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs755468	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7822657	0.95[ASN][1000 genomes]
rs7829633	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7829786	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9297307	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
2	chr8:102680000-102698000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:102683200-102702000	Weak transcription	Fetal Lung	lung
4	chr8:102685600-102698000	Weak transcription	Aorta	Aorta
5	chr8:102688600-102697800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:102689200-102690200	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr8:102689400-102690200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:102689800-102690200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr8:102690000-102690200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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