Variant report

Variant	rs2226401
Chromosome Location	chr8:102743812-102743813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102741883..102743984-chr8:102747080..102748581,2	MCF-7	breast:
2	chr8:102735767..102740606-chr8:102740638..102745212,6	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11991426	0.83[CEU][hapmap]
rs12545512	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.96[ASN][1000 genomes]
rs12548057	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12548828	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs16868198	0.89[CEU][hapmap]
rs16868201	0.83[CEU][hapmap]
rs16868250	0.80[TSI][hapmap]
rs16868262	0.83[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes]
rs16868264	0.83[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs3824090	0.82[CEU][hapmap]
rs3824091	0.83[CEU][hapmap]
rs4734591	0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs6468785	0.82[CEU][hapmap]
rs6989650	0.83[CEU][hapmap]
rs6993923	0.81[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7460166	0.86[JPT][hapmap]
rs7815256	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs7844744	0.97[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
4	chr8:102732000-102762400	Weak transcription	Lung	lung
5	chr8:102734400-102746000	Weak transcription	Left Ventricle	heart
6	chr8:102735000-102760600	Weak transcription	Liver	Liver
7	chr8:102735400-102752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
9	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:102738400-102744000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:102738600-102744200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr8:102738800-102753000	Weak transcription	GM12878-XiMat	blood
15	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
16	chr8:102739200-102747200	Weak transcription	Fetal Kidney	kidney
17	chr8:102739200-102749800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:102742000-102747000	Weak transcription	Right Atrium	heart
19	chr8:102742000-102749400	Weak transcription	Ovary	ovary
20	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:102743200-102744400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:102743200-102744400	Genic enhancers	Fetal Muscle Leg	muscle
23	chr8:102743400-102744000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:102743600-102750800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:102743800-102744200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:102743800-102744200	Enhancers	Right Ventricle	heart
27	chr8:102743800-102747600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links