Variant report

Variant	rs16868198
Chromosome Location	chr8:102698284-102698285
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr8:102698182-102698288	GM12878	blood:	n/a	n/a
2	POLR2A	chr8:102697810-102698882	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000253629	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11991426	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs11994917	0.86[ASN][1000 genomes]
rs11994981	0.87[EUR][1000 genomes]
rs12548828	0.89[CEU][hapmap]
rs12549642	0.86[ASN][1000 genomes]
rs12676557	0.86[EUR][1000 genomes]
rs16868201	0.94[CEU][hapmap];0.81[MEX][hapmap];0.91[TSI][hapmap];0.87[EUR][1000 genomes]
rs16868262	0.89[CEU][hapmap]
rs16868264	0.89[CEU][hapmap]
rs1892756	0.81[ASN][1000 genomes]
rs1892757	0.81[ASN][1000 genomes]
rs2096551	0.81[ASN][1000 genomes]
rs2211914	0.83[ASN][1000 genomes]
rs2226401	0.89[CEU][hapmap]
rs2387622	0.82[ASN][1000 genomes]
rs35227396	0.80[EUR][1000 genomes]
rs3735714	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs3824090	0.94[CEU][hapmap];0.80[MEX][hapmap];0.91[TSI][hapmap]
rs3824091	0.94[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4734037	0.84[EUR][1000 genomes]
rs4734570	0.86[EUR][1000 genomes]
rs4734571	0.84[EUR][1000 genomes]
rs4734572	0.86[ASN][1000 genomes]
rs4734573	0.86[ASN][1000 genomes]
rs59320315	0.89[EUR][1000 genomes]
rs62517420	0.86[EUR][1000 genomes]
rs62517427	0.80[EUR][1000 genomes]
rs6468784	0.86[EUR][1000 genomes]
rs6468785	0.83[CEU][hapmap]
rs6989650	0.94[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs7386202	0.90[EUR][1000 genomes]
rs7829633	0.87[EUR][1000 genomes]
rs7829786	0.86[EUR][1000 genomes]
rs9297307	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
2	chr8:102683200-102702000	Weak transcription	Fetal Lung	lung
3	chr8:102696200-102701600	Weak transcription	Gastric	stomach
4	chr8:102696400-102699600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:102696400-102701000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:102696600-102704600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:102696600-102708400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:102696800-102699200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:102696800-102701800	Weak transcription	Fetal Intestine Large	intestine
10	chr8:102696800-102701800	Weak transcription	Fetal Intestine Small	intestine
11	chr8:102696800-102701800	Weak transcription	Right Atrium	heart
12	chr8:102696800-102702000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:102696800-102702000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr8:102697000-102699000	Weak transcription	Adipose Nuclei	Adipose
15	chr8:102697000-102700400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:102697000-102703000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:102697000-102706600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
19	chr8:102697800-102698400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:102697800-102698400	ZNF genes & repeats	Fetal Muscle Leg	muscle
21	chr8:102697800-102698600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:102697800-102701800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr8:102697800-102703000	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:102697800-102706800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr8:102698000-102698400	ZNF genes & repeats	Aorta	Aorta
26	chr8:102698000-102699000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:102698000-102699200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:102698000-102699400	ZNF genes & repeats	Lung	lung
29	chr8:102698000-102699600	Strong transcription	Left Ventricle	heart
30	chr8:102698000-102702000	Strong transcription	Liver	Liver
31	chr8:102698000-102702000	Strong transcription	Stomach Smooth Muscle	stomach
32	chr8:102698000-102702400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:102698200-102698400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:102698200-102698600	Strong transcription	Primary T cells from cord blood	blood
35	chr8:102698200-102698800	Strong transcription	Fetal Stomach	stomach
36	chr8:102698200-102699400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:102698200-102699600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:102698200-102701400	Strong transcription	Ovary	ovary
39	chr8:102698200-102701800	Weak transcription	Brain Hippocampus Middle	brain
40	chr8:102698200-102706000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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