Variant report

Variant	rs4734573
Chromosome Location	chr8:102677805-102677806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102676339..102678674-chr8:102680968..102682901,3	MCF-7	breast:
2	chr8:102673349..102676352-chr8:102676629..102679510,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10093032	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1075791	1.00[CEU][hapmap]
rs11994917	1.00[ASN][1000 genomes]
rs12549642	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13281022	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs16868198	0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2096551	0.94[ASN][1000 genomes]
rs2211914	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2211920	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2387622	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3735713	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3735714	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734038	0.81[EUR][1000 genomes]
rs4734572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734576	0.82[AMR][1000 genomes]
rs4734584	0.95[CEU][hapmap]
rs4734587	0.91[CEU][hapmap]
rs62517426	0.92[ASN][1000 genomes]
rs6468786	0.91[CEU][hapmap]
rs6468787	0.91[CEU][hapmap]
rs7821380	0.82[JPT][hapmap]
rs7825269	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7826700	0.95[CEU][hapmap]
rs7844230	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4734573	ODF1	cis	parietal	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
2	chr8:102659200-102679400	Weak transcription	HMEC	breast
3	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
4	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
6	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
8	chr8:102670600-102680600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:102670800-102678800	Weak transcription	Esophagus	oesophagus
10	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
11	chr8:102671800-102678600	Weak transcription	Lung	lung
12	chr8:102672800-102682400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:102676200-102679800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:102676200-102680600	Strong transcription	Placenta	Placenta
15	chr8:102676200-102682200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:102676400-102679600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:102676400-102680400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:102676400-102681200	Strong transcription	Fetal Intestine Large	intestine
19	chr8:102676400-102681200	Strong transcription	Placenta Amnion	Placenta Amnion
20	chr8:102676600-102678800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:102676600-102680200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:102676600-102680600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:102676600-102681200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr8:102676600-102681400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:102676600-102682200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:102676800-102679800	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr8:102676800-102680000	Strong transcription	Pancreas	Pancrea
28	chr8:102676800-102681200	Strong transcription	Gastric	stomach
29	chr8:102676800-102681400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr8:102677000-102678800	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr8:102677000-102679400	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:102677000-102679800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:102677400-102678000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:102677400-102678000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr8:102677400-102679800	Strong transcription	NHEK	skin
36	chr8:102677600-102680400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr8:102677800-102678600	Weak transcription	H9 Cell Line	embryonic stem cell

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