Variant report

Variant	rs7825269
Chromosome Location	chr8:102706618-102706619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10093032	0.83[EUR][1000 genomes]
rs10095534	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10099953	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1075791	1.00[CEU][hapmap];0.80[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12549642	0.81[EUR][1000 genomes]
rs13281022	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs2211920	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2387620	0.87[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2387621	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs2387622	0.80[EUR][1000 genomes]
rs3735713	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs3735714	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs4734572	0.80[EUR][1000 genomes]
rs4734573	0.80[EUR][1000 genomes]
rs4734584	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734585	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734587	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6468786	0.91[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6468787	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7460166	0.81[EUR][1000 genomes]
rs7826700	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs7844804	0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102696600-102708400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102697800-102706800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
6	chr8:102700400-102706800	Weak transcription	Esophagus	oesophagus
7	chr8:102701200-102713200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:102701600-102708600	Weak transcription	GM12878-XiMat	blood
9	chr8:102701800-102709400	Weak transcription	Gastric	stomach
10	chr8:102702000-102707200	Enhancers	Fetal Thymus	thymus
11	chr8:102702000-102715600	Weak transcription	Pancreas	Pancrea
12	chr8:102702200-102708600	Weak transcription	Primary T cells from cord blood	blood
13	chr8:102702400-102713000	Weak transcription	Lung	lung
14	chr8:102703200-102708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:102703200-102708200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:102703200-102712400	Weak transcription	Right Ventricle	heart
17	chr8:102703400-102706800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr8:102703400-102707200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:102703600-102708600	Weak transcription	Adipose Nuclei	Adipose
20	chr8:102703800-102708200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:102703800-102712600	Weak transcription	Liver	Liver
22	chr8:102703800-102713000	Weak transcription	Left Ventricle	heart
23	chr8:102704200-102713200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:102704600-102712000	Weak transcription	Fetal Intestine Small	intestine
25	chr8:102704600-102712600	Weak transcription	Colon Smooth Muscle	Colon
26	chr8:102705000-102707600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:102705000-102712600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:102705200-102708600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:102705600-102715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:102705800-102709200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:102706000-102707800	Enhancers	Ovary	ovary
32	chr8:102706000-102712600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr8:102706200-102706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:102706200-102708400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:102706400-102707200	Genic enhancers	Fetal Muscle Leg	muscle
36	chr8:102706400-102712600	Weak transcription	Fetal Stomach	stomach
37	chr8:102706600-102706800	Genic enhancers	Stomach Smooth Muscle	stomach

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