Variant report

Variant	rs7844804
Chromosome Location	chr8:102719633-102719634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10095534	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10099953	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1075791	0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11787002	0.81[EUR][1000 genomes]
rs13270960	0.81[EUR][1000 genomes]
rs13281022	0.84[EUR][1000 genomes]
rs2211920	0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs2387620	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28523870	0.81[EUR][1000 genomes]
rs28619877	0.88[EUR][1000 genomes]
rs4734039	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4734584	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4734585	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4734587	0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6468786	1.00[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6468787	1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7460166	1.00[CEU][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7825269	0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7843836	1.00[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
2	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:102713800-102723200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
6	chr8:102714800-102721600	Weak transcription	Fetal Thymus	thymus
7	chr8:102714800-102722400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:102716000-102721400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:102716000-102733000	Weak transcription	Fetal Heart	heart
10	chr8:102716200-102734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:102716400-102720200	Weak transcription	Psoas Muscle	Psoas
12	chr8:102716400-102720600	Weak transcription	Colon Smooth Muscle	Colon
13	chr8:102716400-102722200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:102716400-102728800	Weak transcription	Fetal Stomach	stomach
15	chr8:102716600-102731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:102716800-102722600	Weak transcription	Ovary	ovary
17	chr8:102716800-102730600	Weak transcription	Left Ventricle	heart
18	chr8:102718000-102720000	Enhancers	NHDF-Ad	bronchial
19	chr8:102718000-102722400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:102719000-102719800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:102719200-102720000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr8:102719400-102720600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr8:102719600-102719800	Genic enhancers	Fetal Muscle Leg	muscle
24	chr8:102719600-102719800	Flanking Active TSS	GM12878-XiMat	blood
25	chr8:102719600-102721200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:102719600-102722800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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