Variant report

Variant	rs11787002
Chromosome Location	chr8:102716376-102716377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102715403..102717842-chr8:102720455..102723118,2	K562	blood:
2	chr8:102704561..102708348-chr8:102712896..102716376,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11782150	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11787378	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12681368	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13270960	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13272106	0.89[EUR][1000 genomes]
rs13272868	0.90[AFR][1000 genomes]
rs2387621	0.80[EUR][1000 genomes]
rs3735715	0.90[AFR][1000 genomes]
rs4256562	0.88[EUR][1000 genomes]
rs56306107	0.89[EUR][1000 genomes]
rs6468791	0.85[EUR][1000 genomes]
rs7828300	0.85[EUR][1000 genomes]
rs7829690	0.91[EUR][1000 genomes]
rs7844804	0.81[EUR][1000 genomes]
rs9297308	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
2	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:102712400-102716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:102712600-102716600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:102713000-102716400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr8:102713600-102716600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:102713800-102723200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:102714000-102718000	Weak transcription	NHDF-Ad	bronchial
10	chr8:102714200-102719000	Weak transcription	Fetal Kidney	kidney
11	chr8:102714400-102717600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:102714600-102719600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
14	chr8:102714800-102716400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr8:102714800-102716800	Enhancers	Placenta	Placenta
16	chr8:102714800-102721600	Weak transcription	Fetal Thymus	thymus
17	chr8:102714800-102722400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr8:102715000-102716400	Enhancers	Colon Smooth Muscle	Colon
19	chr8:102715200-102718800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:102715600-102716400	Enhancers	Stomach Smooth Muscle	stomach
21	chr8:102715600-102716600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:102715600-102716800	Enhancers	Left Ventricle	heart
23	chr8:102715600-102716800	Enhancers	Ovary	ovary
24	chr8:102715600-102716800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr8:102715600-102716800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr8:102715600-102717600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:102715800-102716400	Enhancers	Fetal Stomach	stomach
28	chr8:102716000-102716400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr8:102716000-102716400	Enhancers	GM12878-XiMat	blood
30	chr8:102716000-102716800	Genic enhancers	Fetal Muscle Leg	muscle
31	chr8:102716000-102717600	Weak transcription	Right Atrium	heart
32	chr8:102716000-102721400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr8:102716000-102733000	Weak transcription	Fetal Heart	heart
34	chr8:102716200-102716400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr8:102716200-102716400	Enhancers	Psoas Muscle	Psoas
36	chr8:102716200-102717200	Weak transcription	Esophagus	oesophagus
37	chr8:102716200-102717400	Weak transcription	Lung	lung
38	chr8:102716200-102717600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:102716200-102734000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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