Variant report

Variant	rs9297308
Chromosome Location	chr8:102735385-102735386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr8:102733565-102735562	SK-N-SH	brain:	n/a	n/a
2	EP300	chr8:102734264-102735533	SK-N-SH	brain:	n/a	chr8:102734470-102734484
3	PBX3	chr8:102734942-102735438	SK-N-SH	brain:	n/a	n/a
4	TCF12	chr8:102734107-102735530	SK-N-SH	brain:	n/a	n/a
5	TCF12	chr8:102734870-102735440	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
NCALD	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11782150	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs11787002	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11787378	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs12681368	0.84[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13270960	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs13272106	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2387621	0.81[CEU][hapmap]
rs28523870	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28619877	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3735715	0.80[CEU][hapmap]
rs4256562	0.91[EUR][1000 genomes]
rs4734039	0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56306107	0.85[EUR][1000 genomes]
rs6468791	0.88[EUR][1000 genomes]
rs7828300	0.84[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7829690	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs9987401	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
3	chr8:102722000-102738200	Weak transcription	GM12878-XiMat	blood
4	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
5	chr8:102730600-102743400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:102731600-102737000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
8	chr8:102731800-102737200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:102731800-102743400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:102732000-102762400	Weak transcription	Lung	lung
11	chr8:102733000-102735400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:102733000-102735400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:102733200-102735400	Enhancers	Fetal Muscle Leg	muscle
14	chr8:102733200-102737800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:102733400-102735400	Enhancers	Colon Smooth Muscle	Colon
16	chr8:102733600-102735400	Enhancers	Fetal Kidney	kidney
17	chr8:102733600-102735400	Enhancers	Fetal Stomach	stomach
18	chr8:102733600-102735600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:102733600-102743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:102733800-102735400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:102733800-102735400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr8:102734000-102735400	Enhancers	Adipose Nuclei	Adipose
23	chr8:102734000-102735400	Enhancers	Brain Anterior Caudate	brain
24	chr8:102734000-102735400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:102734000-102735400	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr8:102734000-102735400	Enhancers	Stomach Smooth Muscle	stomach
27	chr8:102734000-102735800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:102734200-102735400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr8:102734200-102735400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:102734200-102735400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:102734200-102735400	Enhancers	Brain Hippocampus Middle	brain
32	chr8:102734200-102735400	Enhancers	Small Intestine	intestine
33	chr8:102734400-102735400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr8:102734400-102735400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr8:102734400-102737200	Weak transcription	Ovary	ovary
36	chr8:102734400-102737200	Weak transcription	Pancreas	Pancrea
37	chr8:102734400-102741600	Weak transcription	Right Atrium	heart
38	chr8:102734400-102746000	Weak transcription	Left Ventricle	heart
39	chr8:102734600-102735400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr8:102734800-102735400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr8:102734800-102735400	Enhancers	H9 Cell Line	embryonic stem cell
42	chr8:102734800-102735400	Enhancers	Brain Angular Gyrus	brain
43	chr8:102734800-102735400	Enhancers	NHDF-Ad	bronchial
44	chr8:102735000-102735400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:102735000-102735400	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr8:102735000-102735400	Enhancers	Fetal Lung	lung
47	chr8:102735000-102740200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:102735000-102760600	Weak transcription	Liver	Liver
49	chr8:102735200-102735400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr8:102735200-102735400	Enhancers	Right Ventricle	heart

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