Variant report

Variant	rs9987401
Chromosome Location	chr8:102741806-102741807
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11782150	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs11787002	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12681368	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13270960	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13272106	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2387621	0.81[CEU][hapmap]
rs28523870	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28619877	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3735715	0.80[CEU][hapmap]
rs4256562	0.93[EUR][1000 genomes]
rs4734039	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs56306107	0.85[EUR][1000 genomes]
rs6468791	0.83[JPT][hapmap];0.89[EUR][1000 genomes]
rs7828300	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7829690	0.91[CEU][hapmap];0.83[JPT][hapmap];0.95[EUR][1000 genomes]
rs7843836	0.87[JPT][hapmap]
rs9297308	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102730600-102743400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
5	chr8:102731800-102743400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:102732000-102762400	Weak transcription	Lung	lung
7	chr8:102733600-102743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:102734400-102746000	Weak transcription	Left Ventricle	heart
9	chr8:102735000-102760600	Weak transcription	Liver	Liver
10	chr8:102735400-102752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
12	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:102737800-102742000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:102738400-102743200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:102738400-102744000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:102738600-102744200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr8:102738800-102753000	Weak transcription	GM12878-XiMat	blood
20	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
21	chr8:102739200-102747200	Weak transcription	Fetal Kidney	kidney
22	chr8:102739200-102749800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:102739800-102742200	Enhancers	Adipose Nuclei	Adipose
24	chr8:102740200-102742200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:102740200-102742400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:102741600-102742000	Enhancers	Ovary	ovary
27	chr8:102741600-102742000	Enhancers	Right Atrium	heart
28	chr8:102741600-102742000	Enhancers	Right Ventricle	heart
29	chr8:102741800-102742200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:102741800-102743200	Weak transcription	Fetal Muscle Leg	muscle

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