Variant report

Variant	rs11782150
Chromosome Location	chr8:102718362-102718363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11787002	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11787378	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11994917	0.84[EUR][1000 genomes]
rs12681368	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13270960	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs13271310	0.81[EUR][1000 genomes]
rs13272106	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13272868	0.81[EUR][1000 genomes]
rs2186390	0.81[EUR][1000 genomes]
rs2387621	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs3735715	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs3735717	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs4734587	0.82[EUR][1000 genomes]
rs56306107	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6468786	0.81[EUR][1000 genomes]
rs6468787	0.81[EUR][1000 genomes]
rs6468791	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7828300	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7829690	0.82[EUR][1000 genomes]
rs9297308	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs9987401	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
2	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:102713800-102723200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:102714200-102719000	Weak transcription	Fetal Kidney	kidney
6	chr8:102714600-102719600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
8	chr8:102714800-102721600	Weak transcription	Fetal Thymus	thymus
9	chr8:102714800-102722400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:102715200-102718800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:102716000-102721400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:102716000-102733000	Weak transcription	Fetal Heart	heart
13	chr8:102716200-102734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr8:102716400-102719200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:102716400-102720200	Weak transcription	Psoas Muscle	Psoas
16	chr8:102716400-102720600	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:102716400-102722200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:102716400-102728800	Weak transcription	Fetal Stomach	stomach
19	chr8:102716600-102718400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:102716600-102719400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr8:102716600-102731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr8:102716800-102719200	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:102716800-102722600	Weak transcription	Ovary	ovary
24	chr8:102716800-102730600	Weak transcription	Left Ventricle	heart
25	chr8:102717600-102718800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:102718000-102719000	Weak transcription	GM12878-XiMat	blood
27	chr8:102718000-102720000	Enhancers	NHDF-Ad	bronchial
28	chr8:102718000-102722400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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