Variant report

Variant	rs6468791
Chromosome Location	chr8:102745927-102745928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11782150	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs11787002	0.85[EUR][1000 genomes]
rs11787378	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs12681368	0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs13270960	0.82[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs13272106	0.96[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs16868264	0.91[JPT][hapmap]
rs2387621	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs3735715	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs3735717	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs4256562	0.94[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4734039	0.97[CHD][hapmap];0.87[GIH][hapmap]
rs4734584	0.80[MEX][hapmap]
rs56306107	0.93[EUR][1000 genomes]
rs6468787	0.80[MEX][hapmap]
rs7828300	0.96[CEU][hapmap];0.83[JPT][hapmap];0.99[EUR][1000 genomes]
rs7829690	1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9297308	0.88[EUR][1000 genomes]
rs9987401	0.83[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6468791	DGKZ	trans	cerebellum	SCAN
rs6468791	ODF1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
4	chr8:102732000-102762400	Weak transcription	Lung	lung
5	chr8:102734400-102746000	Weak transcription	Left Ventricle	heart
6	chr8:102735000-102760600	Weak transcription	Liver	Liver
7	chr8:102735400-102752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
9	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:102738800-102753000	Weak transcription	GM12878-XiMat	blood
13	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
14	chr8:102739200-102747200	Weak transcription	Fetal Kidney	kidney
15	chr8:102739200-102749800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:102742000-102747000	Weak transcription	Right Atrium	heart
17	chr8:102742000-102749400	Weak transcription	Ovary	ovary
18	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:102743600-102750800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:102743800-102747600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr8:102744200-102746400	Weak transcription	Right Ventricle	heart
24	chr8:102744400-102746000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:102744400-102752200	Strong transcription	Fetal Muscle Leg	muscle
26	chr8:102745000-102750800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:102745200-102746200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:102745200-102747000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr8:102745800-102746000	Enhancers	Brain Substantia Nigra	brain

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