Variant report

Variant	rs7829690
Chromosome Location	chr8:102746436-102746437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11782150	0.82[EUR][1000 genomes]
rs11787002	0.91[EUR][1000 genomes]
rs12681368	1.00[ASW][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13270960	0.91[CEU][hapmap];0.85[GIH][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs13272106	0.83[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs16868264	0.91[JPT][hapmap]
rs4256562	0.94[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4734039	0.95[CHD][hapmap];0.89[GIH][hapmap]
rs56306107	0.81[EUR][1000 genomes]
rs6468791	1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7828300	0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs9297308	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs9987401	0.91[CEU][hapmap];0.83[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7829690	ODF1	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
3	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
4	chr8:102732000-102762400	Weak transcription	Lung	lung
5	chr8:102735000-102760600	Weak transcription	Liver	Liver
6	chr8:102735400-102752800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:102735400-102757800	Weak transcription	Fetal Stomach	stomach
8	chr8:102735400-102768400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr8:102735400-102768400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:102735800-102759200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:102738800-102753000	Weak transcription	GM12878-XiMat	blood
12	chr8:102738800-102756800	Weak transcription	Fetal Brain Female	brain
13	chr8:102739200-102747200	Weak transcription	Fetal Kidney	kidney
14	chr8:102739200-102749800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:102742000-102747000	Weak transcription	Right Atrium	heart
16	chr8:102742000-102749400	Weak transcription	Ovary	ovary
17	chr8:102742200-102759200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:102743600-102750800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:102743800-102747600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:102743800-102761800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr8:102744000-102768000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:102744400-102752200	Strong transcription	Fetal Muscle Leg	muscle
23	chr8:102745000-102750800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:102745200-102747000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr8:102746000-102746600	Enhancers	Left Ventricle	heart
26	chr8:102746200-102746600	Enhancers	Fetal Heart	heart
27	chr8:102746200-102748400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:102746400-102746600	Enhancers	Brain Substantia Nigra	brain
29	chr8:102746400-102746600	Enhancers	Right Ventricle	heart
30	chr8:102746400-102758000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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