Variant report

Variant	rs12681368
Chromosome Location	chr8:102732152-102732153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1075791	1.00[CHB][hapmap]
rs11782150	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11787002	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11787378	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11994917	0.81[EUR][1000 genomes]
rs13270960	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs13272106	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13281022	0.90[CHB][hapmap]
rs2387621	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs3735715	0.96[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs3735717	0.92[CEU][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs4256562	0.81[EUR][1000 genomes]
rs4734039	0.84[GIH][hapmap];0.81[ASN][1000 genomes]
rs56306107	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6468787	0.82[GIH][hapmap]
rs6468791	0.96[CEU][hapmap];0.98[GIH][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs7828300	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7829690	1.00[ASW][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];0.81[MKK][hapmap];0.80[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7843836	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs9297308	0.84[CEU][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9987401	0.84[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12681368	ODF1	cis	parietal	SCAN
rs12681368	ALPK2	trans	cerebellum	SCAN
rs12681368	DGKZ	trans	cerebellum	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
3	chr8:102716000-102733000	Weak transcription	Fetal Heart	heart
4	chr8:102716200-102734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr8:102722000-102738200	Weak transcription	GM12878-XiMat	blood
6	chr8:102722800-102734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:102723000-102733800	Weak transcription	Gastric	stomach
8	chr8:102727800-102733000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:102728800-102732800	Enhancers	Fetal Kidney	kidney
10	chr8:102729200-102733400	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:102729200-102733800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:102729200-102734200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:102729400-102734200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:102729400-102734200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:102729600-102734200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:102730000-102733000	Weak transcription	Fetal Stomach	stomach
17	chr8:102730000-102733200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr8:102730000-102733800	Weak transcription	Brain Substantia Nigra	brain
19	chr8:102730000-102734600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:102730000-102734800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:102730000-102735200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr8:102730000-102756000	Weak transcription	Psoas Muscle	Psoas
23	chr8:102730200-102733000	Weak transcription	Pancreas	Pancrea
24	chr8:102730200-102734200	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:102730400-102733600	Weak transcription	Right Ventricle	heart
26	chr8:102730400-102734000	Weak transcription	Brain Anterior Caudate	brain
27	chr8:102730400-102734000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr8:102730400-102734800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr8:102730400-102735000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr8:102730600-102734400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr8:102730600-102743400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr8:102730800-102733400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:102730800-102734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr8:102730800-102734600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr8:102730800-102734800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr8:102731000-102732400	Weak transcription	Fetal Lung	lung
37	chr8:102731000-102734400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr8:102731000-102734600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr8:102731000-102734800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:102731400-102733000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:102731600-102733000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr8:102731600-102733000	Weak transcription	Ovary	ovary
43	chr8:102731600-102733000	Weak transcription	Right Atrium	heart
44	chr8:102731600-102733200	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:102731600-102734000	Weak transcription	Adipose Nuclei	Adipose
46	chr8:102731600-102734000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr8:102731600-102734200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:102731600-102737000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:102731600-102752600	Weak transcription	Aorta	Aorta
50	chr8:102731800-102733000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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