Variant report

Variant	rs11787378
Chromosome Location	chr8:102704556-102704557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102699783..102701302-chr8:102702548..102704933,2	MCF-7	breast:
2	chr8:102703417..102705716-chr8:102712935..102714769,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10093614	0.82[EUR][1000 genomes]
rs11782150	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11787002	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11994917	0.90[EUR][1000 genomes]
rs12681368	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13270960	0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs13271310	0.87[EUR][1000 genomes]
rs13272106	0.96[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13272868	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13281022	0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs2096551	0.86[EUR][1000 genomes]
rs2186390	0.87[EUR][1000 genomes]
rs2211914	0.84[EUR][1000 genomes]
rs2211920	0.81[EUR][1000 genomes]
rs2387621	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs3735714	0.84[CEU][hapmap]
rs3735715	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3735717	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs4734038	0.83[EUR][1000 genomes]
rs56306107	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62517426	0.82[EUR][1000 genomes]
rs6468791	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs7828300	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9297308	1.00[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102696600-102704600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr8:102696600-102708400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr8:102697000-102706600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:102697600-102713000	Weak transcription	Psoas Muscle	Psoas
5	chr8:102697800-102706800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:102698200-102706000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:102698600-102704600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:102698800-102705600	Weak transcription	Colonic Mucosa	Colon
9	chr8:102699000-102705800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:102699600-102705200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr8:102700000-102704600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
14	chr8:102700400-102706800	Weak transcription	Esophagus	oesophagus
15	chr8:102701200-102706200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:102701200-102713200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:102701600-102705000	Enhancers	Ovary	ovary
18	chr8:102701600-102705400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr8:102701600-102708600	Weak transcription	GM12878-XiMat	blood
20	chr8:102701800-102704600	Enhancers	Colon Smooth Muscle	Colon
21	chr8:102701800-102709400	Weak transcription	Gastric	stomach
22	chr8:102702000-102705000	Genic enhancers	Fetal Muscle Leg	muscle
23	chr8:102702000-102707200	Enhancers	Fetal Thymus	thymus
24	chr8:102702000-102715600	Weak transcription	Pancreas	Pancrea
25	chr8:102702200-102708600	Weak transcription	Primary T cells from cord blood	blood
26	chr8:102702400-102704800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:102702400-102713000	Weak transcription	Lung	lung
28	chr8:102702800-102705400	Enhancers	Thymus	Thymus
29	chr8:102702800-102706200	Enhancers	Placenta	Placenta
30	chr8:102703200-102708000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:102703200-102708200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:102703200-102712400	Weak transcription	Right Ventricle	heart
33	chr8:102703400-102704600	Enhancers	Fetal Brain Female	brain
34	chr8:102703400-102706800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr8:102703400-102707200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:102703600-102708600	Weak transcription	Adipose Nuclei	Adipose
37	chr8:102703800-102704800	Weak transcription	Right Atrium	heart
38	chr8:102703800-102705000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:102703800-102705800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:102703800-102708200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:102703800-102712600	Weak transcription	Liver	Liver
42	chr8:102703800-102713000	Weak transcription	Left Ventricle	heart
43	chr8:102704000-102705400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:102704000-102705400	Strong transcription	Fetal Stomach	stomach
45	chr8:102704000-102705800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:102704000-102705800	Weak transcription	Fetal Kidney	kidney
47	chr8:102704000-102705800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:102704200-102713200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr8:102704400-102704600	Enhancers	Fetal Intestine Large	intestine
50	chr8:102704400-102704600	Enhancers	Fetal Intestine Small	intestine

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