Variant report

Variant	rs13272868
Chromosome Location	chr8:102670516-102670517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102661081..102663898-chr8:102668064..102670538,3	MCF-7	breast:
2	chr8:102664289..102666765-chr8:102667718..102671185,4	MCF-7	breast:
3	chr8:102667718..102669402-chr8:102670482..102672103,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10093614	0.91[EUR][1000 genomes]
rs11782150	0.81[EUR][1000 genomes]
rs11787002	0.90[AFR][1000 genomes]
rs11787378	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11994917	0.90[EUR][1000 genomes]
rs13271310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13272106	0.80[EUR][1000 genomes]
rs2096551	0.90[EUR][1000 genomes]
rs2186390	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2211914	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2387621	0.80[EUR][1000 genomes]
rs3735715	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3735717	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4734038	0.95[EUR][1000 genomes]
rs56306107	0.80[EUR][1000 genomes]
rs62517426	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
3	chr8:102659200-102679400	Weak transcription	HMEC	breast
4	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
5	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
7	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:102664400-102676800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:102664800-102676800	Weak transcription	Gastric	stomach
11	chr8:102664800-102677000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:102665400-102676400	Weak transcription	Fetal Intestine Large	intestine
13	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
14	chr8:102668200-102670800	Strong transcription	Pancreas	Pancrea
15	chr8:102668200-102671000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:102668200-102671200	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr8:102668800-102674000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:102669000-102674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:102669200-102677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:102669400-102676400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:102669400-102676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr8:102669400-102676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:102669400-102676600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:102670000-102671000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:102670000-102671800	Enhancers	Fetal Brain Male	brain
26	chr8:102670200-102670600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr8:102670200-102670600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:102670200-102670600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:102670200-102670600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:102670200-102670600	Enhancers	Brain Cingulate Gyrus	brain
31	chr8:102670200-102670600	Enhancers	Brain Germinal Matrix	brain
32	chr8:102670200-102670600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:102670200-102670600	Enhancers	Fetal Brain Female	brain
34	chr8:102670200-102670600	Enhancers	Fetal Muscle Trunk	muscle
35	chr8:102670200-102670800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr8:102670200-102670800	Strong transcription	H9 Cell Line	embryonic stem cell
37	chr8:102670200-102670800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:102670200-102670800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:102670200-102670800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:102670200-102670800	Enhancers	Brain Angular Gyrus	brain
41	chr8:102670200-102672000	Strong transcription	Placenta	Placenta
42	chr8:102670400-102670600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:102670400-102670600	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr8:102670400-102670600	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr8:102670400-102670600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr8:102670400-102670600	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr8:102670400-102670800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:102670400-102670800	Enhancers	Brain Hippocampus Middle	brain
49	chr8:102670400-102670800	Strong transcription	Esophagus	oesophagus
50	chr8:102670400-102670800	Strong transcription	Placenta Amnion	Placenta Amnion

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