Variant report

Variant	rs16868138
Chromosome Location	chr8:102664415-102664416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102664289..102666765-chr8:102667718..102671185,4	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10955269	0.97[ASN][1000 genomes]
rs1111881	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11991426	0.86[EUR][1000 genomes]
rs11994981	0.90[EUR][1000 genomes]
rs12676557	0.91[EUR][1000 genomes]
rs16868201	0.90[EUR][1000 genomes]
rs1892753	0.84[EUR][1000 genomes]
rs1892754	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28851296	0.81[EUR][1000 genomes]
rs28856107	0.81[EUR][1000 genomes]
rs35227396	0.86[EUR][1000 genomes]
rs3824091	0.87[EUR][1000 genomes]
rs4734037	0.93[EUR][1000 genomes]
rs4734567	0.97[ASN][1000 genomes]
rs4734570	0.91[EUR][1000 genomes]
rs4734571	0.89[EUR][1000 genomes]
rs59320315	0.87[EUR][1000 genomes]
rs62517420	0.91[EUR][1000 genomes]
rs62517427	0.81[EUR][1000 genomes]
rs6468784	0.87[EUR][1000 genomes]
rs6468785	0.82[EUR][1000 genomes]
rs6989650	0.90[EUR][1000 genomes]
rs7386202	0.87[EUR][1000 genomes]
rs7829633	0.85[EUR][1000 genomes]
rs7829786	0.85[EUR][1000 genomes]
rs9297307	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3402975	chr8:102662576-102666774	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102650800-102664600	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
4	chr8:102655200-102669400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:102657200-102668200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:102658600-102665800	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr8:102659200-102679400	Weak transcription	HMEC	breast
8	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
9	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:102661800-102668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
12	chr8:102662000-102664600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:102662000-102668200	Weak transcription	Esophagus	oesophagus
14	chr8:102662400-102668000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:102662600-102668400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr8:102663000-102667600	Weak transcription	NHEK	skin
17	chr8:102663000-102668200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:102663600-102664800	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:102663800-102664600	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr8:102663800-102664800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:102663800-102664800	Genic enhancers	Gastric	stomach
23	chr8:102663800-102664800	Genic enhancers	Pancreas	Pancrea
24	chr8:102663800-102665400	Strong transcription	Fetal Intestine Large	intestine
25	chr8:102664200-102664600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:102664200-102665400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:102664400-102664800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:102664400-102664800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
29	chr8:102664400-102665400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:102664400-102665600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr8:102664400-102665800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:102664400-102667800	Weak transcription	Placenta	Placenta
33	chr8:102664400-102676800	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links