Variant report

Variant	rs1125589
Chromosome Location	chr8:102650798-102650799
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102643444..102646539-chr8:102648297..102653448,5	MCF-7	breast:
2	chr8:102649060..102651936-chr8:102661670..102663613,2	MCF-7	breast:
3	chr8:102499850..102508532-chr8:102642696..102652505,26	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10955264	0.83[ASN][1000 genomes]
rs10955266	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13264047	0.82[EUR][1000 genomes]
rs1892756	0.81[EUR][1000 genomes]
rs1892757	0.81[EUR][1000 genomes]
rs2032118	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2387623	0.84[EUR][1000 genomes]
rs4317540	0.84[EUR][1000 genomes]
rs56277720	0.84[EUR][1000 genomes]
rs7017592	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755468	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102619800-102656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:102643000-102650800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:102644600-102651200	Weak transcription	Gastric	stomach
4	chr8:102644600-102652200	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:102644600-102663800	Weak transcription	Lung	lung
6	chr8:102644800-102651400	Weak transcription	Fetal Kidney	kidney
7	chr8:102644800-102674600	Weak transcription	Ovary	ovary
8	chr8:102645000-102651600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:102645000-102656000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:102645600-102653800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:102645600-102655600	Strong transcription	Placenta	Placenta
12	chr8:102646000-102652000	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:102646200-102652400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr8:102646200-102653600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:102646600-102651000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:102647000-102651000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:102647000-102651200	Weak transcription	Esophagus	oesophagus
18	chr8:102647000-102652200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr8:102647200-102655800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr8:102647800-102651000	Weak transcription	Aorta	Aorta
21	chr8:102648200-102655800	Weak transcription	Colonic Mucosa	Colon
22	chr8:102648600-102651800	Weak transcription	Small Intestine	intestine
23	chr8:102648600-102663600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr8:102648800-102650800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:102648800-102650800	Weak transcription	Fetal Lung	lung
26	chr8:102648800-102650800	Weak transcription	Stomach Mucosa	stomach
27	chr8:102648800-102652000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr8:102648800-102653200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr8:102648800-102653600	Strong transcription	NHEK	skin
30	chr8:102648800-102654200	Weak transcription	A549	lung
31	chr8:102649000-102654200	Weak transcription	Fetal Intestine Small	intestine
32	chr8:102649200-102651400	Strong transcription	Placenta Amnion	Placenta Amnion
33	chr8:102649400-102650800	Weak transcription	Fetal Stomach	stomach
34	chr8:102649400-102651000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr8:102649400-102652200	Strong transcription	HMEC	breast
36	chr8:102649600-102651200	Weak transcription	Fetal Intestine Large	intestine
37	chr8:102649600-102651200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr8:102649600-102651600	Weak transcription	GM12878-XiMat	blood
39	chr8:102649800-102651000	Weak transcription	Pancreas	Pancrea
40	chr8:102650000-102650800	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr8:102650000-102650800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr8:102650400-102650800	Enhancers	Colon Smooth Muscle	Colon
43	chr8:102650400-102652000	Enhancers	Brain Germinal Matrix	brain
44	chr8:102650600-102651200	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr8:102650600-102651600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:102650600-102653600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:102650600-102664400	Strong transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links